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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_411088_434380_F

Intron Information:

Intron Rank:
142344
Intron Class:
major
Intron Phase:
Intron Coordinates:
411088 - 434380
Intron Length:
23293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CATTCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATTCCATTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
76.3
0.59
0.9
66.6
39.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
50.3
-0
2
67.6
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026661
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045533
411015 - 436093
25079