About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_411307_411465_F

Intron Information:

Intron Rank:
132887
Intron Class:
major
Intron Phase:
Intron Coordinates:
411307 - 411465
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GTTCTCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TGGACCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
79.7
0.67
0.8
70.3
36.3
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
58.9
0.36
1.8
74.51
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021489
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024227
380867 - 411783
30917