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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_411498_411741_F

Intron Information:

Intron Rank:
132888
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
411498 - 411741
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCAATCCAA|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GCTCTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
42.2
-0.4
3.2
59.2
40.8
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
53.9
0.1
1.5
60.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021489
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024227
380867 - 411783
30917