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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_412968_413546_R

Intron Information:

Intron Rank:
130324
Intron Class:
major
Intron Phase:
Intron Coordinates:
412968 - 413546
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TAACCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
58
0.25
1.7
68.15
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017339
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046066
412870 - 415205
2336