Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_413603_413838_R

Intron Information:

Intron Rank:

130325

Intron Class:

major

Intron Phase:

Intron Coordinates:

413603 - 413838

Intron Length:

236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

CATTCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

CATCCCAGAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

79.2

0.66

0.8

69.9

36.2

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

50.7

1.8

63.57

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017339

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046066

412870 - 415205

2336