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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_4276_4986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4276 - 4986
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACT
5'SS Class:
major
3'SS Sequence:
CCTGTGCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTCTCTCACCC
Flanking Amino Acid:
HGEDAGVVCAEGTAVKVPAQ
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
75.3
40.8
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
64
0.31
1
55.1
40.2
Minor 5ss
47.6
-0.2
2.6
67.7
43
Minor BPS
49.6
-0
1.8
63.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030668
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033419
21 - 7609
7589
ENSAPLT00000032955
21 - 8436
8416
ENSAPLT00000021131
21 - 8436
8416