Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_448955_449810_R

Intron Information:

Intron Rank:

142484

Intron Class:

major

Intron Phase:

Intron Coordinates:

448955 - 449810

Intron Length:

856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGTGTACT

5'SS Class:

major

3'SS Sequence:

TTTGCCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAT

U12 Branch Point Sequence:

TTTGCCCCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

66.1

Major BPS

70.9

0.52

1.1

71.4

36.6

Major PPT

76.2

0.59

0.8

69.5

31.3

Minor 5ss

-1

2.7

52.7

Minor BPS

46.4

-0.2

2.3

68.3

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023953

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039376

448740 - 454029

5290