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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_449867_450103_R

Intron Information:

Intron Rank:
142485
Intron Class:
major
Intron Phase:
Intron Coordinates:
449867 - 450103
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
CACTCCAGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
79.2
0.66
0.8
69.9
36.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
47.3
-0.3
1.8
50.3
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023953
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039376
448740 - 454029
5290