Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_59897_60254_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59897 - 60254

Intron Length:

358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

TGTCTCCCATCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAC

U12 Branch Point Sequence:

TTGTCTCCCATC

Flanking Amino Acid:

QFLRDFLSGELPHGSWFEHV

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

65.2

40.8

Major BPS

72.6

0.56

0.9

63.1

35.8

Major PPT

73.3

0.52

0.9

71.5

34.3

Minor 5ss

32.8

-2

3.3

40.9

45.3

Minor BPS

43.5

-0.5

2.1

58.72

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010197

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010621

58033 - 61535

3503