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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_662_3927_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
662 - 3927
Intron Length:
3266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTCTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TTCAAGGTACAT
Flanking Amino Acid:
GLLIYLACLCESASHHQDSR
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
70.7
0.47
0.9
65.7
36
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
33.2
-1.2
2.6
54.39
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030668
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033419
21 - 7609
7589