Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_71151_71778_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71151 - 71778

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCACC

5'SS Class:

major

3'SS Sequence:

GGCATTTGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

ACTCCCTTAACA

Flanking Amino Acid:

TWKMPAWCAQR*

Intron Amino Acid Position:

1320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

69.7

41.3

Major BPS

0.52

1.1

77.7

35.3

Major PPT

67.3

0.39

1.1

60.9

44.5

Minor 5ss

46.2

-0.4

2.6

61.9

42.5

Minor BPS

0.91

1.2

79.53

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010096

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024211

11701 - 71849

60149