Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008217.1_988_1199_R

Intron Information:

Intron Rank:

130223

Intron Class:

major

Intron Phase:

Intron Coordinates:

988 - 1199

Intron Length:

212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGGC

5'SS Class:

major

3'SS Sequence:

GCCTCTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTGCAC

U12 Branch Point Sequence:

CGGGGTTGCACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

65.7

Major BPS

48.9

-0

1.5

63.1

44.5

Major PPT

78.8

0.65

0.8

72.4

32.3

Minor 5ss

28.5

-2.5

3.6

41.2

45.5

Minor BPS

34.6

-1.3

2.1

31.67

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017263

Chromosome:

PEDO01008217.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022656

21 - 1349

1329