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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008243.1_435_525_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
435 - 525
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCGC
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
TCCTCCTTCTCC
Flanking Amino Acid:
LGQENPQLLQQISQHQEQFI
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
50
43.4
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
71
0.47
0.8
61.5
29
Minor 5ss
35.6
-1.6
3.5
51.1
45.5
Minor BPS
43.4
-0.5
3.6
65.52
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017049
Chromosome:
PEDO01008243.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041875
21 - 1015
995