Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008259.1_6379_7113_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6379 - 7113

Intron Length:

735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTGG

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCTCTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

TACAACGCGACA

Flanking Amino Acid:

NIIKQFKLSCSKLAASFQSM

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.8

42.7

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

78.2

0.64

0.7

73.5

24.7

Minor 5ss

37.8

-1.4

46.8

48.5

Minor BPS

39.3

-0.8

2.2

49.38

41.1

Associated Gene:

Gene:

RRAGB

Ensembl Gene ID:

ENSAPLG00000014128

Chromosome:

PEDO01008259.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041693

21 - 8846

8826

ENSAPLT00000014730

21 - 8439

8419