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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008297.1_1063_1387_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1063 - 1387
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCGCG
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGTCCCCACCG
Flanking Amino Acid:
QRPVKHLVKEMNLLLREYLL
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.3
60.6
44.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
77
0.61
0.8
68.8
37.2
Minor 5ss
32.1
-2
3.2
39.4
46
Minor BPS
44
-0.5
2.2
52.05
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017140
Chromosome:
PEDO01008297.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033753
42 - 2043
2002