About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008337.1_4356_4547_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4356 - 4547
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CACCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TGCCCCCCACCC
Flanking Amino Acid:
GHNGAGKTTTMSILTGLLPP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
58.7
42.8
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
71.5
0.48
0.8
61.4
34.6
Minor 5ss
40.2
-1.1
3
51.1
45.8
Minor BPS
42.8
-0.5
2
54.01
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016984
Chromosome:
PEDO01008337.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023367
22 - 5846
5825