Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008337.1_4896_4989_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4896 - 4989

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

TGCTGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

ACGTCCCCAACA

Flanking Amino Acid:

KRHEQTRNLSGGMQRKLSVA

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

54.2

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

69.1

0.43

0.9

34.8

Minor 5ss

25.1

-2.9

3.1

22.5

37.5

Minor BPS

50.8

0.02

1.9

62.92

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016984

Chromosome:

PEDO01008337.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023367

22 - 5846

5825