About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008351.1_122_244_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
122 - 244
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCACCCAAC
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCCGCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
GCCGCTCCAACC
Flanking Amino Acid:
PRAPFPCMVWLANSERNVHK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.4
54.3
47
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
49.2
-0
1.7
56.7
33.5
Minor 5ss
33.4
-1.9
4.1
42.3
45
Minor BPS
42.9
-0.5
1.9
47.43
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016490
Chromosome:
PEDO01008351.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039557
74 - 1122
1049