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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008355.1_2432_2526_R

Intron Information:

Intron Rank:
139590
Intron Class:
major
Intron Phase:
Intron Coordinates:
2432 - 2526
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTTCAGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
74.5
0.55
0.8
66.4
35.7
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
47
-0.2
2
63.54
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022564
Chromosome:
PEDO01008355.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041141
521 - 2994
2474