Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008355.1_540_617_F

Intron Information:

Intron Rank:

129334

Intron Class:

major

Intron Phase:

Intron Coordinates:

540 - 617

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CAGCTCTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

GGGTCCCCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

77.5

32.9

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

0.29

57.2

38.2

Minor 5ss

28.5

-2.5

3.2

31.7

42.6

Minor BPS

43.5

-0.5

2.1

53.22

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019575

Chromosome:

PEDO01008355.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043496

393 - 2994

2602