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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008356.1_842_1191_R

Intron Information:

Intron Rank:
139293
Intron Class:
major
Intron Phase:
Intron Coordinates:
842 - 1191
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGCCTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.9
0.63
0.9
72.7
36.6
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
62.5
0.37
1.8
75.58
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022412
Chromosome:
PEDO01008356.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023288
21 - 1715
1695