Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008391.1_1317_1399_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1317 - 1399

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGCC

U12 Branch Point Sequence:

CCCCCCTGCCCT

Flanking Amino Acid:

LADPDTYYGFRFCHQLDFST

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.3

35.8

Major BPS

27.4

-1.4

4.1

46.4

38.9

Major PPT

70.6

0.46

0.8

61.2

35.1

Minor 5ss

32.2

-2

3.3

41.8

45.1

Minor BPS

33.6

-1.1

3.5

53.41

47.7

Associated Gene:

Gene:

RPUSD1

Ensembl Gene ID:

ENSAPLG00000012316

Chromosome:

PEDO01008391.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039120

21 - 1712

1692

ENSAPLT00000012816

21 - 1712

1692