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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008412.1_1545_1644_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1545 - 1644
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAA
U12 Branch Point Sequence:
GTGGCCTCAACC
Flanking Amino Acid:
GSCLPYVALEGVVLPAKAAL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
55.4
0.13
1.2
59.5
39
Major PPT
69.6
0.44
0.8
60.4
35.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
60.1
0.3
1.7
67.46
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025360
Chromosome:
PEDO01008412.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017593
21 - 2109
2089