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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008412.1_1733_1836_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1733 - 1836
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGCG
5'SS Class:
major
3'SS Sequence:
CCTGCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
AGCCCGGTGACC
Flanking Amino Acid:
RKAAVAARVQEAPKLPVGEE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
45.5
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
72.5
0.51
0.8
62
34.8
Minor 5ss
41.1
-1
3.4
56.7
47.5
Minor BPS
40.3
-0.7
2.5
50.03
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025360
Chromosome:
PEDO01008412.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017593
21 - 2109
2089