Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008412.1_6781_6886_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6781 - 6886

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGAGGC

5'SS Class:

major

3'SS Sequence:

GCTCCGCGGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACGGAT

U12 Branch Point Sequence:

GGTGACGGATGC

Flanking Amino Acid:

RTAPGGAHRQDRRLERQRLV

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

60.3

39.3

Major BPS

46.4

-0.2

1.5

41.8

Major PPT

0.11

1.1

49.6

39.3

Minor 5ss

23.9

-3

3.3

32.2

42.7

Minor BPS

30.7

-1.4

2.2

37.51

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018560

Chromosome:

PEDO01008412.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017956

2846 - 8043

5198

ENSAPLT00000017449

2872 - 8043

5172