Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008434.1_1368_1446_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1368 - 1446

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCGTC

5'SS Class:

major

3'SS Sequence:

TTGCGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGGTGCTGAGGC

Flanking Amino Acid:

LGYYHVLEPRVADGTPCSPE

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

66.6

39.6

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

67.8

0.4

61.4

Minor 5ss

-1.7

3.4

41.5

45.4

Minor BPS

-0.8

2.1

44.7

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017351

Chromosome:

PEDO01008434.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034275

486 - 1960

1475