About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008437.1_1218_2288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1218 - 2288
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATGCA
5'SS Class:
major
3'SS Sequence:
TCTTTCAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
DQPEIALRFYRRLLQMGVYN
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70.1
33.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.5
0.55
0.9
67.6
38
Minor 5ss
38.4
-1.3
3.1
50.2
46.2
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030814
Chromosome:
PEDO01008437.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040114
1081 - 8325
7245