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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008437.1_2464_3772_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2464 - 3772
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
ATCTTACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACAAATT
Flanking Amino Acid:
VWYNLGHVAVGIGDLNLAYQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.8
74.8
34.4
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
51.7
0.13
2.2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030814
Chromosome:
PEDO01008437.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040114
1081 - 8325
7245