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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008455.1_35375_35500_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35375 - 35500
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGCTCTTATTT
Flanking Amino Acid:
AEIEEKAERLKEQAAELAWR
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
66
40.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
34.6
-1.8
3
41.2
39.1
Minor BPS
61.4
0.44
1.6
76.67
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020909
Chromosome:
PEDO01008455.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038775
34351 - 36811
2461