Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008480.1_10037_10173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10037 - 10173

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTACGGACC

5'SS Class:

major

3'SS Sequence:

CTCATGTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TCCCCCTCATGT

Flanking Amino Acid:

VLGPQQLHCLDINECAEGSH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

63.5

39.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

70.1

0.45

0.9

60.9

40.1

Minor 5ss

32.6

-2

3.3

40.6

Minor BPS

45.1

-0.2

2.1

61.24

48.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018857

Chromosome:

PEDO01008480.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020987

8043 - 10339

2297