Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008487.1_2267_2320_F

Intron Information:

Intron Rank:

142326

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2267 - 2320

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAAGACG

5'SS Class:

major

3'SS Sequence:

CAAGGCGCTGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCTCAA

U12 Branch Point Sequence:

CCACGCTCAAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

65.5

Major BPS

58.2

0.2

1.1

37.5

Major PPT

52.4

0.06

43.5

38.2

Minor 5ss

26.5

-2.7

31.3

42.6

Minor BPS

39.2

-0.9

2.1

37.42

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026648

Chromosome:

PEDO01008487.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041892

2096 - 2770

675