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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008503.1_1916_2073_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1916 - 2073
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCACAA
U12 Branch Point Sequence:
GGTGGCACAAGC
Flanking Amino Acid:
IMQETFLVQEVIELPVTERQ
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
44.3
-0.3
1.2
46.7
38.9
Major PPT
76.7
0.6
0.8
70
30.9
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
36.4
-1
2.2
45.02
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030238
Chromosome:
PEDO01008503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045550
525 - 5227
4703
ENSAPLT00000043617
525 - 5227
4703
ENSAPLT00000028729
525 - 5227
4703