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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008503.1_824_1588_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
824 - 1588
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTCCCCC
5'SS Class:
weak_major
3'SS Sequence:
TCCTCCGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTC
Flanking Amino Acid:
GAAPELLHPQ*
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.2
49.4
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
1
64.5
36.5
Minor 5ss
45.3
-0.5
2.7
60.3
44.3
Minor BPS
54.3
0.11
1.8
68.28
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030238
Chromosome:
PEDO01008503.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028729
525 - 5227
4703