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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008505.1_405_990_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
405 - 990
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGATCGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCCTTGATC
Flanking Amino Acid:
KEARKRELKKNKKQRMMVRA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
68.2
0.41
0.9
66
40.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
81.8
0.98
0.9
84.02
28.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014728
Chromosome:
PEDO01008505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015381
306 - 4358
4053