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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008544.1_1766_1858_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1766 - 1858
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
ACCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
AGCACCTTGACC
Flanking Amino Acid:
WGPYAGWAQAVLFCAALHKG
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
67.3
0.39
0.8
57.6
32.5
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
64.7
0.45
1.3
65.86
39.6

Associated Gene:

Gene:
OGG1
Ensembl Gene ID:
ENSAPLG00000019992
Chromosome:
PEDO01008544.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025785
21 - 2224
2204