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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008582.1_2672_2756_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2672 - 2756
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ACTTCCTGATGA
Flanking Amino Acid:
RVLEKWIGLKVSLATCVCVG
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
48.8
-0
2
62.44
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029418
Chromosome:
PEDO01008582.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027092
54 - 2921
2868