Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008597.1_1179_1279_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1179 - 1279

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACCGGCC

5'SS Class:

weak_major

3'SS Sequence:

TTGTCTCTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATTTATTAATT

Flanking Amino Acid:

LHSHDVRYGSGSGQQSVTGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.2

0.15

1.3

51.5

41.4

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

81.7

0.71

0.8

77.1

31.6

Minor 5ss

35.4

-1.7

3.7

50.7

46.1

Minor BPS

71.8

0.76

1.5

86.09

33.4

Associated Gene:

Gene:

SDF2

Ensembl Gene ID:

ENSAPLG00000002242

Chromosome:

PEDO01008597.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002241

55 - 1718

1664