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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_10504_10841_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10504 - 10841
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAA
U12 Branch Point Sequence:
AGGCCCAATATT
Flanking Amino Acid:
YSDGELASMDSPAPSHLSSP
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.4
34.2
Major BPS
62.3
0.31
1
59.3
37.5
Major PPT
84.8
0.78
0.7
80.8
24.3
Minor 5ss
30.2
-2.3
3.7
45.9
49.3
Minor BPS
40.1
-0.7
2
53.39
41.5

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300