Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_11141_11864_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11141 - 11864

Intron Length:

724

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCGGTGAT

5'SS Class:

major

3'SS Sequence:

GTCCTTGTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

GGGAGCTGATGG

Flanking Amino Acid:

FFVQESEENERSIRSCLCTS

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.3

72.3

39.5

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

77.2

0.61

0.9

68.4

42.1

Minor 5ss

28.4

-2.5

3.3

40.1

Minor BPS

33.7

-1.3

30.39

40.6

Associated Gene:

Gene:

LPIN3

Ensembl Gene ID:

ENSAPLG00000005962

Chromosome:

PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006182

4156 - 12455

8300