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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_4991_5073_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4991 - 5073
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCCCCCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCACACCT
Flanking Amino Acid:
FYAAFGNRATDVYAYRHVGL
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
56.5
42.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
65.1
0.34
0.9
60.6
29.4
Minor 5ss
29.6
-2.3
3.2
41
45.3
Minor BPS
41.9
-0.5
2
57.84
45

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300