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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_5186_5485_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5186 - 5485
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
CCTTGTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
CCTCTGTGCACA
Flanking Amino Acid:
APSSLFSAFHREVIEKKPEV
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
74.5
0.55
0.9
65
41.3
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
38.7
-0.8
2.3
48.43
42.4

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300