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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_7064_7302_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7064 - 7302
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATGTACT
5'SS Class:
weak_major
3'SS Sequence:
CACTTCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TCCCACTTCACT
Flanking Amino Acid:
KSLRLSSEQIGRLNLQDGPN
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
69.8
40.4
Major BPS
68.7
0.46
1
71.3
34
Major PPT
73.4
0.53
0.9
66.5
33.9
Minor 5ss
46
-0.4
2.5
61.6
36.9
Minor BPS
51.2
0.12
2
70.09
46.4

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300