Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_7433_7714_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7433 - 7714

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATAAA

U12 Branch Point Sequence:

TGCAGAATAAAG

Flanking Amino Acid:

GTLQPESAQQRQEEEGSSSD

Intron Amino Acid Position:

608

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

53.1

0.08

1.2

56.3

37.2

Major PPT

73.6

0.53

0.9

69.4

31.3

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

36.9

-1.1

2.1

40.62

42.5

Associated Gene:

Gene:

LPIN3

Ensembl Gene ID:

ENSAPLG00000005962

Chromosome:

PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006182

4156 - 12455

8300