About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_7777_8202_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7777 - 8202
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTTGCA
5'SS Class:
major
3'SS Sequence:
TTCCACCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AAGGTGTTAATG
Flanking Amino Acid:
WRRREFPAEEQQSRPGKANM
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.7
33.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.6
0.6
0.8
69.2
31.2
Minor 5ss
33.7
-1.9
3
41.6
44.9
Minor BPS
44.7
-0.5
2.1
45.72
41.6

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300