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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_8698_8868_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8698 - 8868
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ATATTCCCATCC
Flanking Amino Acid:
DPNLVILINKKYYNWAVAAP
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
69.4
35.6
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
29.3
-2.4
3.1
34.7
35.3
Minor BPS
44.7
-0.4
2
58.62
39.9

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300