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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_9216_9322_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9216 - 9322
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
ATTGCCTGATGT
Flanking Amino Acid:
EEQVALYLPRSEVEQTSKPV
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
68.1
0.41
1
64.5
36.7
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
48.1
-0
2.1
71.08
45.6

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300