About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008610.1_9423_9813_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9423 - 9813
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCATTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
ATCTCAGTATGT
Flanking Amino Acid:
LESCEPQQRQGSIKRSPHLG
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
51.2
0.03
1.7
62.3
43.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
40.8
-0.6
2.5
62.99
47

Associated Gene:

Gene:
LPIN3
Ensembl Gene ID:
ENSAPLG00000005962
Chromosome:
PEDO01008610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006182
4156 - 12455
8300