Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008630.1_12497_12598_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12497 - 12598

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

TCCCTTTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GCGCCCTCACCA

Flanking Amino Acid:

CGWCKDYITLGCRHLWYRLL

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.48

1.3

65.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

80.1

0.68

0.7

75.8

26.2

Minor 5ss

39.4

-1.2

39.9

Minor BPS

46.9

-0.2

1.9

53.79

44.4

Associated Gene:

Gene:

TMC6

Ensembl Gene ID:

ENSAPLG00000012310

Chromosome:

PEDO01008630.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020120

11099 - 19227

8129

ENSAPLT00000012834

11099 - 17188

6090

ENSAPLT00000034068

11099 - 19227

8129