Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008630.1_17196_17317_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

17196 - 17317

Intron Length:

122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCCCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

TCTCACAGAGAC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

71.3

37.2

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

73.7

0.53

0.8

70.1

30.8

Minor 5ss

-2.1

3.3

42.6

44.4

Minor BPS

38.1

-0.9

1.9

48.71

40.1

Associated Gene:

Gene:

TMC6

Ensembl Gene ID:

ENSAPLG00000012310

Chromosome:

PEDO01008630.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034068

11099 - 19227

8129

ENSAPLT00000020120

11099 - 19227

8129