Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008630.1_18994_19138_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18994 - 19138

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTGG

5'SS Class:

major

3'SS Sequence:

GTTCTTCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

AGTTCCCTGATT

Flanking Amino Acid:

YCCGEHIVPLGEEERDKDPT

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

62.4

44.7

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

75.1

0.56

0.9

70.3

35.1

Minor 5ss

43.4

-0.7

2.9

52.7

46.4

Minor BPS

63.3

0.5

1.6

79.22

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023034

Chromosome:

PEDO01008630.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040867

18078 - 19647

1570